YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28377869, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMNKLIFGRY IPGDSVVHHM DPRAKLLLSF YFIGIIFIAN NWATYALLFA FTLAAIYLSG  60
   61 VKWSFFINGV KPLIWLILFT VILQVLFSAS GGHVYFQWGI ITISQLGLIN GVYIFCRFVL 120
  121 IIFMSTLLTL TTPPLELSDA IEYILMPLKA VHFPVYEVAL MLSIALRFVP TLMDETEKIM 180
  181 NAQRARGVDF GEGNIFQQMR AVVPLLIPLF VSSFNRAEDL ATAMEARGYQ GGEGRSKYRI 240
  241 LKWHQRDTWA TGCFAILTVA LIFLRA

Type	Start	End	Confidence
Cytoplasmic	1	26	0.86
Transmembrane Helix	27	58	0.78
Non-Cytoplasmic	59	72	0.55
Transmembrane Helix	73	96	0.90
Cytoplasmic	97	105	0.53
Transmembrane Helix	106	131	0.78
Non-Cytoplasmic	132	149	0.56
Transmembrane Helix	150	170	0.67
Cytoplasmic	171	244	0.84
Transmembrane Helix	245	264	0.86
Non-Cytoplasmic	265	266	0.76