YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28377173, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	49	0.96
Transmembrane Helix	50	68	0.92
Non-Cytoplasmic	69	87	0.85
Transmembrane Helix	88	110	0.87
Cytoplasmic	111	117	0.87
Transmembrane Helix	118	139	0.90
Non-Cytoplasmic	140	156	0.82
Transmembrane Helix	157	176	0.91
Cytoplasmic	177	195	0.83
Transmembrane Helix	196	218	0.87
Non-Cytoplasmic	219	237	0.62
Transmembrane Helix	238	267	0.76
Cytoplasmic	268	303	0.43
Transmembrane Helix	304	327	0.87
Non-Cytoplasmic	328	337	0.35
Transmembrane Helix	338	370	0.58
Cytoplasmic	371	371	0.21
Transmembrane Helix	372	396	0.71
Non-Cytoplasmic	397	409	0.47
Transmembrane Helix	410	433	0.82
Cytoplasmic	434	444	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARRTLRLLR IPYLYDWCNM DNFINMLNAK VLPVANKVGT QRHMTAIRKG IISTLPLTIV  60
   61 GSFFTILNNM PIEAVANFLA PYAEILDVPF RYTVGILALY ATFGIASSLA ESYQLDKLTN 120
  121 GVLAVLAFLV STAVPVHVTK NVSGVISSGR YINIANLSAS SLFGSIITGL LTVEIFRYLK 180
  181 NRNITIKMPE GVPPEVSNSF VALVPAAVIL VLFWGIRYLL DFNISSFLST LLMPLKGVLV 240
  241 GNSLFGGLLT IFLITGFWTL GIHGAAIMDP VIRPFWEMSI AQNMSEFTSG TSAHNLSTIF 300
  301 TEQFLQWFIW IGGAGGTLAL VVLFMFSKST YLRDLGKLSL LPGLFNINEP IIFGAPIVMN 360
  361 PILGIPFIIG PLITGSLAYV LTITGVVPMM MARLPFTVPG PLGAFISTNW SVPALILSCV 420
  421 NFVIDLVIYY PFFKVFEKQQ LSKE