YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28204085, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIKKLIDSF NYAIEGLVYA VRTQRNMRIH MIAALLVLTA SFFYDMTKVE LLIVLLTITS  60
   61 VITAELFNTA IEFTIDATTN YYHPLAKIAK NISAAAVLLT AINALAVGYI IFWQKLEDIN 120
  121 FKVIKKIKSS DPYMIFLILF IVCIATLVIK AIYGEGTPLR GGMPSGHSAI AFAIATTIAL 180
  181 LTEETVSIML SYILALIVAQ SRVDSETHSI IEVLAGAFLG IFLTIFLFKI FGG

Type	Start	End	Confidence
Cytoplasmic	1	26	0.69
Transmembrane Helix	27	47	0.75
Non-Cytoplasmic	48	91	0.65
Transmembrane Helix	92	113	0.96
Cytoplasmic	114	132	0.89
Transmembrane Helix	133	153	0.96
Non-Cytoplasmic	154	169	0.81
Transmembrane Helix	170	196	0.84
Cytoplasmic	197	209	0.75
Transmembrane Helix	210	231	0.92
Non-Cytoplasmic	232	233	0.78