YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28211600, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.88
Transmembrane Helix	8	28	0.81
Non-Cytoplasmic	29	52	0.83
Transmembrane Helix	53	76	0.85
Cytoplasmic	77	105	0.79
Transmembrane Helix	106	127	0.78
Non-Cytoplasmic	128	132	0.64
Transmembrane Helix	133	151	0.83
Cytoplasmic	152	187	0.86
Transmembrane Helix	188	207	0.94
Non-Cytoplasmic	208	219	0.78
Transmembrane Helix	220	241	0.92
Cytoplasmic	242	250	0.80
Transmembrane Helix	251	273	0.85
Non-Cytoplasmic	274	279	0.66
Transmembrane Helix	280	300	0.83
Cytoplasmic	301	343	0.87
Transmembrane Helix	344	366	0.87
Non-Cytoplasmic	367	387	0.95
Transmembrane Helix	388	412	0.88
Cytoplasmic	413	428	0.95
Transmembrane Helix	429	450	0.89
Non-Cytoplasmic	451	458	0.65
Transmembrane Helix	459	477	0.93
Cytoplasmic	478	502	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFKSRGLLF EDLFIFLVDI SITTLSPLKN KYLIGGWKME KALQIFNKID SLVWGPPLLI  60
   61 LLVGTGIYLS IRLGFLQIGK LPLAFKYLFK KDDDSNGEGD VTSFQALCTA LAATIGTGNI 120
  121 VGVATAIKAG GPGAIFWMWV AAFFGMATKY AEGLLAVKYR VTDKNGQMSG GPMYYIERGL 180
  181 GKKWLAKMFA VFGIGVAFFG IGTFAQINAI SESLKDSFGV PVILTGIIIT ILVASVTLGG 240
  241 INSIAKVAEK IVPFMATLYV LASITIIITN IKLVPIAVSL IIKSAFNPTA AIGGALGITV 300
  301 RQAIQNGVAR GVFSNESGLG SAPIASAAAK TKSCVRQGLI SMTGTFIDTI VICTMTGITL 360
  361 VLTGMWESDL AGAAMTNAAF VEGMPLPILG KFIISVGLAF FAFTTILGWN YYGERCTEYL 420
  421 FGIKGIKPYR YTFIAIVAIG GMSILKLDLI WVIADIVNGL MAIPNLIGLI GLSGIVVSET 480
  481 KKYFNNMDEK EVEEEPRRAI AR