YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28203897, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.88
Transmembrane Helix	10	28	0.89
Non-Cytoplasmic	29	38	0.72
Transmembrane Helix	39	59	0.89
Cytoplasmic	60	70	0.86
Transmembrane Helix	71	90	0.93
Non-Cytoplasmic	91	98	0.70
Transmembrane Helix	99	121	0.92
Cytoplasmic	122	129	0.75
Transmembrane Helix	130	147	0.97
Non-Cytoplasmic	148	156	0.73
Transmembrane Helix	157	176	0.95
Cytoplasmic	177	186	0.89
Transmembrane Helix	187	205	0.90
Non-Cytoplasmic	206	219	0.80
Transmembrane Helix	220	241	0.93
Cytoplasmic	242	251	0.86
Transmembrane Helix	252	271	0.94
Non-Cytoplasmic	272	276	0.77
Transmembrane Helix	277	297	0.86
Cytoplasmic	298	332	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNSKESKKG ILLALLAGAS WGAMGIFVKN LEQLGFSPMV ISSFRPTIAI IPYIIINLIK  60
   61 NPECFKTDLK GLLLFAAYGI FALDGMFIGS SYAVKYTGVA TASVLLFVNP VIVMILSYFL 120
  121 FKEKFTVNKI IALVLTLVGC CLVVKAYDPA AFKVNLIGVF WGIISSFAMA LQNILGRIGT 180
  181 ERYSQKTHLT YSLLFGAIFL WFFEPPWSLV SLIKNTEPTI SILNVLALGI VSTLVPTIAI 240
  241 VKSLEYVESS KASIIASVEP VVASILAFII FGEIFEIPQL IGMFMIMGSI VLVQTDGKKR 300
  301 KIEKTMKKAS KEGMEESESD KPDKFKKQIT AN