YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28211318, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.64
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENKSSSKRK TFLVIGIVFL LTLLCFQQKA LAAPGQIPIP RINISPGDGG DPKTYVDNLK  60
   61 LFLMITALSI LPSFIVMMTS FVRISVVFGF LRNAMGTQQS PPNQVLVGLA LFLTIFIMTP 120
  121 VYQIINKEAI QPFVKSEINQ EQAFETGSKP LREFMLKQTR EKDLKLFVEI SNIDKNITKE 180
  181 NVPLYVVVPS FIISELKTAF QIGFLLYIPF LVIDLVVASV LMSMGMFMLP PVMVSLPFKL 240
  241 LLFVMVDGWH LLIKSLIMSF K

Type	Start	End	Confidence
Signal Peptide	1	32	0.64
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	63	0.91
Transmembrane Helix	64	87	0.72
Cytoplasmic	88	104	0.67
Transmembrane Helix	105	125	0.74
Non-Cytoplasmic	126	202	0.56
Transmembrane Helix	203	229	0.78
Cytoplasmic	230	231	0.37
Transmembrane Helix	232	253	0.78
Non-Cytoplasmic	254	261	0.36