YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28203124, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.99
Transmembrane Helix	7	29	0.88
Non-Cytoplasmic	30	36	0.79
Transmembrane Helix	37	55	0.94
Cytoplasmic	56	67	0.87
Transmembrane Helix	68	84	0.95
Non-Cytoplasmic	85	90	0.63
Transmembrane Helix	91	111	0.89
Cytoplasmic	112	119	0.81
Transmembrane Helix	120	141	0.90
Non-Cytoplasmic	142	151	0.80
Transmembrane Helix	152	172	0.92
Cytoplasmic	173	183	0.83
Transmembrane Helix	184	205	0.89
Non-Cytoplasmic	206	212	0.81
Transmembrane Helix	213	235	0.89
Cytoplasmic	236	242	0.83
Transmembrane Helix	243	263	0.78
Non-Cytoplasmic	264	270	0.65
Transmembrane Helix	271	286	0.82
Cytoplasmic	287	301	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDVKKAHFL AIILMILWGM SYLSIKVVVH EIHPVLSAFY RFLIAAIILF IYLKVRYPEE  60
   61 KVLKEDKIKM ALGGFFGVAM YFLFENYAVY FTTASNVAII ISSIPIFTLI SQRIIFKEKI 120
  121 NVVKAIGASL SIIGIGIILL SKGKVSLFSK GTIGDLMGIG AALCWVAYTV VISKLKGNYR 180
  181 SIVITTYQTI WGCIFLSPSI FIFQHSIMPS TKAIANLLYL SFFCTCIGYA IYIYCQNKLG 240
  241 ATVITTYINL QPIVSIISAK ILLNENINSK QILGSAIIII GLFLASKSEK INKQIIEALK 300
  301 G