YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28202992, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYSILDYLF IYSLASIWVL LLMNIILSLS GYSYYKCAEK IKLSKMPSND YPFVSIIVPA  60
   61 HNEEKVIEKT VKSLLLLDYP KNKMEIIVVN DNSQDNTATL LENLKREYDM DNLKIINTDN 120
  121 ITGGKGKFNA LNIGFNHSVG ELIAIYDADN TPNKLALKYL VQTIKKDENL GAVIGKFRTR 180
  181 NKERNLLTKF INIETLSFQW MAQAGRWQLF NLCTIPGTNF IIRRDIIKEI GGWDIKAIAE 240
  241 DTEISFRIYK LGYKIKFMPL AVTWEQEPES LKVWFKQRTR WVKGNIYVLL KHMKNIGNKE 300
  301 DKSILFDIVY FFTVYFLFLS SVIISDLIFI TSLFSDLQIN VLGNFLVLWI LAYLLFILEV 360
  361 GLTLTLEKGE SNFKNIALIP IMYFTYCQMW MIVSIKGMFQ YFFDNLFKRE VKWYKTERF

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.76
Transmembrane Helix	14	35	0.87
Cytoplasmic	36	307	0.96
Transmembrane Helix	308	330	0.88
Non-Cytoplasmic	331	344	0.75
Transmembrane Helix	345	366	0.89
Cytoplasmic	367	375	0.84
Transmembrane Helix	376	395	0.86
Non-Cytoplasmic	396	419	0.85