YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28202879, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACKKEVVSI KTPILMGLID IIVAVLLDFA IGDPYWFPHP VIYIGKLISY LEEVGRKHFK  60
   61 SNKGLKTLGG LVVLTIAITS FGIPFLILWM VKDSFWIFHF LNIILIWTTL AAKSLKVEGK 120
  121 RVYYALKNED IQEAREKLSY IVGRDTRNLT EEEIIRADIE TIMENTADGV IAPLFYAMIG 180
  181 GAPFAMMYKG INTMDSMLGY MNDKYIHLGF FPAKVDDVFN FIPARISGVL ICLSAPIVKG 240
  241 NIIRSFKVML RDRKNHKSPN CAYPEGAGAG VMGIQLGGTN VYFGKAVYKP TIGDRIKDLH 300
  301 HELINDSVKL MYASETLMVI IYALTVTSYN LR

Type	Start	End	Confidence
Cytoplasmic	1	9	0.82
Transmembrane Helix	10	31	0.73
Non-Cytoplasmic	32	35	0.63
Transmembrane Helix	36	50	0.70
Cytoplasmic	51	66	0.75
Transmembrane Helix	67	88	0.93
Non-Cytoplasmic	89	94	0.81
Transmembrane Helix	95	115	0.86
Cytoplasmic	116	168	0.96
Transmembrane Helix	169	191	0.85
Non-Cytoplasmic	192	220	0.95
Transmembrane Helix	221	243	0.88
Cytoplasmic	244	332	0.64