YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28210359, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERIKKQKSI SKIFAIYVVL FCIVTIIVGV INLSLFMIGL NKGFILPANY YERRIENQRS  60
   61 EIAKAKDVKK LIPEECKYAV YDLNGKVLQG NVSQDKAVGM WNIVKSNKIS NGRYFYKIIQ 120
  121 RYNGICVVEY RINVSFKNPT LRKYIKTPEV TFELLLLGLF IFEILIFSRS FNKRLKKEIK 180
  181 ILKDTTENIQ MENLEFKVKY SNIVEINDVI NALDKMKTKL SESLTKQWDM EETRKEQIGA 240
  241 LAHDIKTPLT IIRGNSELLK ESDLNDEQTK FNDDILNEIK NMEFYIKSLI EITRSEKEPA 300
  301 IEKKQVNLIK FIDNIMKTGH LISKNKNLSF KSRIKNIPEF IFIDEIALKR VINNIISNSV 360
  361 DYSLENGEIL LTVDSDDKNI QFIIEDSGKG FTKEEISFAT KQFFQGDKSR NSKNHYGMGL 420
  421 YIAEKIIEKH NGSIILENSK LLKGAKVILN LPNS

Type	Start	End	Confidence
Cytoplasmic	1	12	0.96
Transmembrane Helix	13	37	0.90
Non-Cytoplasmic	38	454	0.64