YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28202432, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.56
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKKYVVGID LGGTTISGGV LDYEGNIVFR HTIDTKSELG EKIVLERIIK VIDYVIKKSK  60
   61 IPKNNIKAIG IGSPGPLDIE KGIIITSPNL PFKNFNIVNP IKNHFKISVY LDNDANAAAV 120
  121 GEYKFGSGKG SRNMIFITVS TGIGGGAILN GNIYRGSSSN ALEIGHMTLK EDGAICNCGN 180
  181 FGCAEALASG TAIAKKARME LNRGKESSLK KLKKISAYNV FQEAKNGDKL AQEIVDEALE 240
  241 YLGICVSNII ITFDPDTIVI GGGVSKAGDI IFNKINQVVK ERCFEAMWKN TKIIKALLLE 300
  301 DAGIIGAASL AIFEESK

Type	Start	End	Confidence
Cytoplasmic	1	133	0.52
Transmembrane Helix	134	154	0.49
Non-Cytoplasmic	155	317	0.85