YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|251812044, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.89
Transmembrane Helix	18	39	0.85
Non-Cytoplasmic	40	55	0.87
Transmembrane Helix	56	76	0.94
Cytoplasmic	77	82	0.74
Transmembrane Helix	83	103	0.87
Non-Cytoplasmic	104	110	0.61
Transmembrane Helix	111	132	0.87
Cytoplasmic	133	140	0.90
Transmembrane Helix	141	163	0.90
Non-Cytoplasmic	164	173	0.86
Transmembrane Helix	174	194	0.92
Cytoplasmic	195	201	0.75
Transmembrane Helix	202	220	0.95
Non-Cytoplasmic	221	251	0.92
Transmembrane Helix	252	276	0.85
Cytoplasmic	277	293	0.85
Transmembrane Helix	294	317	0.85
Non-Cytoplasmic	318	323	0.89
Transmembrane Helix	324	346	0.89
Cytoplasmic	347	352	0.77
Transmembrane Helix	353	374	0.89
Non-Cytoplasmic	375	390	0.76
Transmembrane Helix	391	413	0.89
Cytoplasmic	414	423	0.82
Transmembrane Helix	424	442	0.94
Non-Cytoplasmic	443	444	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKYFQFDKH GTSYKNEILG GITTFLSMAY ILAVNPQILS LAGVKGATSD MKMDQGAIFV  60
   61 ATALAAFVGS LFMGLIAKYP IALAPGMGLN AFFAFTVVLT MGIPWQVGLT GVLFSGIFFA 120
  121 LLTVTGLREV IINAIPHQMK LAVSAGIGLF ITFVGLQSSG IIIKSDSTLV KLGHLTEAPV 180
  181 LLAIFGIIVT VILYAMKIPG SIFIGMIVTA VAGMLTGQIH PPSGIIGEVP SIKPTFGAAF 240
  241 ESFKDPGQLF TIQFLIVILT FLFIDFFDTA GTLVAVATQA GLMKDNKLPR AGRALFSDSL 300
  301 ATIVGSVFGT TTTTSYIEST SGVAVGARTG FASIVTGICF LLALFFSPLI EVVTSAVTTP 360
  361 ALVVVGVLMA ANFADINWKQ FEVAVPAFIT IIMMPLSYSI ATGIACGFIF YPITMIITKK 420
  421 YKEVHPIMYF LMALFILYFI FVHK