YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27468564, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.88
Transmembrane Helix	5	24	0.87
Cytoplasmic	25	40	0.90
Transmembrane Helix	41	59	0.96
Non-Cytoplasmic	60	73	0.78
Transmembrane Helix	74	99	0.85
Cytoplasmic	100	105	0.83
Transmembrane Helix	106	128	0.86
Non-Cytoplasmic	129	149	0.91
Transmembrane Helix	150	169	0.94
Cytoplasmic	170	197	0.91
Transmembrane Helix	198	217	0.95
Non-Cytoplasmic	218	246	0.95
Transmembrane Helix	247	266	0.96
Cytoplasmic	267	285	0.92
Transmembrane Helix	286	308	0.91
Non-Cytoplasmic	309	315	0.87
Transmembrane Helix	316	338	0.91
Cytoplasmic	339	350	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVWTIISGLV VGILLGFVMQ RTRFCLAGGF RDMYVQKSNK MFYALLIAIT VQSIGLLILK  60
   61 NLNIIEVPAE TFPVIGTILG SFVFGIGIVL AGGCATGTWY RAGEGLIGSW VALIFYALTS 120
  121 AVTKTGVLLP IMNQINKPTQ VSTSMTSTTG IPQWILVMLL TVITIFLVVK TIRKPKIMVP 180
  181 QLKQKYSGIR HYLFEKRYHP FVAGIAIGFI ALLAWPMSES TGRMGGLGIT TPSANLVNYL 240
  241 ISGDLKFIDW GVLLVLGIFI GSYIAAKGSK EFRWRLPDIK TIRNSALGGI FMGFGASVAG 300
  301 GCSIGNGLVE TATMSWQGWI ALASMIIGVW FMSYFIFVKP MKKLQQVSQS