YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27467421, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEFFATLSD RKGQLFSTII EHIQLSFIAL FIATLIAVPI AILLTKTKKL SEIVMNIAAV  60
   61 LQTIPSLALL GLMIPIFGIG RLPAIIALVV YALLPILRNT YTGIKEVDPS LIEAAKGIGM 120
  121 KPLRRLTKVE LPIAMPVIMA GIRTAMVLII GTATLAALIG AGGLGDLILL GIDRNNSALI 180
  181 LIGAIPAALL AIIFDFILRY MERLSYKKLL ISLGTIVIVI IIAIAIPMAA QKGDKITFAG 240
  241 KLGSEPSIIT NMYKILIEED TDDTVEVKDG MGKTSFLFNA LKSDEIDGYL EFTGTVLGEL 300
  301 TKEDLKSKKE NDVYQQAKSS LEKKYDMTML KPMKYNNTYA LAVKRDFAKK YQIKTIGDLR 360
  361 KVEDKLKPGF TLEFNDRPDG YKAVKKTYHL NLSNVKTMEP KLRYTAVKKG DINLIDAYST 420
  421 DAELKQYNMV VLKDDQHVFP PYQGAPLFKE KYLKDHPEVK KPLNKLANRI TDEEMQEMNY 480
  481 KVTVKKEDPY KVAREYLEKE KLIK

Type	Start	End	Confidence
Non-Cytoplasmic	1	22	0.84
Transmembrane Helix	23	44	0.93
Cytoplasmic	45	52	0.79
Transmembrane Helix	53	74	0.86
Non-Cytoplasmic	75	81	0.52
Transmembrane Helix	82	101	0.82
Cytoplasmic	102	143	0.91
Transmembrane Helix	144	165	0.86
Non-Cytoplasmic	166	177	0.78
Transmembrane Helix	178	198	0.96
Cytoplasmic	199	208	0.88
Transmembrane Helix	209	230	0.94
Non-Cytoplasmic	231	504	0.99