YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26250926, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	44	0.92
Transmembrane Helix	45	67	0.76
Non-Cytoplasmic	68	76	0.79
Transmembrane Helix	77	100	0.87
Cytoplasmic	101	108	0.91
Transmembrane Helix	109	128	0.96
Non-Cytoplasmic	129	134	0.73
Transmembrane Helix	135	159	0.79
Cytoplasmic	160	177	0.82
Transmembrane Helix	178	201	0.91
Non-Cytoplasmic	202	209	0.88
Transmembrane Helix	210	230	0.91
Cytoplasmic	231	268	0.97
Transmembrane Helix	269	290	0.91
Non-Cytoplasmic	291	307	0.91
Transmembrane Helix	308	329	0.92
Cytoplasmic	330	337	0.87
Transmembrane Helix	338	357	0.96
Non-Cytoplasmic	358	363	0.79
Transmembrane Helix	364	387	0.88
Cytoplasmic	388	398	0.80
Transmembrane Helix	399	421	0.90
Non-Cytoplasmic	422	429	0.85
Transmembrane Helix	430	449	0.94
Cytoplasmic	450	511	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKWANSARK AMLKRKKVKP ITLRDVTIID DGKLRKAITA ASLGNAMEWF DFGVYGFVAY  60
   61 ALGKVFFPGA DPSVQMVAAL ATFSVPFLIR PLGGLFFGML GDKYGRQKIL AITIVIMSIS 120
  121 TFCIGLIPSY DTIGIWAPIL LLICKMAQGF SVGGEYTGAS IFVAEYSPDR KRGFMGSWLD 180
  181 FGSIAGFVLG AGVVVLISTI VGEENFLDWG WRIPFFIALP LGIIGLYLRH ALEETPAFQQ 240
  241 HVDKLEQGDR EGLQDGPKVS FKEIATKHWR SLLTCIGLVI ATNVTYYMLL TYMPSYLSHN 300
  301 LHYSEDHGVL IIIAIMIGML FVQPVMGLLS DRFGRRPFVL LGSVALFVLA IPAFILINSN 360
  361 VIGLIFAGLL MLAVILNCFT GVMASTLPAM FPTHIRYSAL AAAFNISVLV AGLTPTLAAW 420
  421 LVESSQNLMM PAYYLMVVAV VGLITGVTMK ETANRPLKGA TPAASDIQEA KEILVEHYDN 480
  481 IEQKIDDIDH EIADLQAKRT RLVQQHPRID E