YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26111115, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.33
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKSSAAGRK RKKSILLTAV RSIRSANADF PRIIIKPGGF SRLGFLFVTI LRYPCISLRY  60
   61 REKKMKKAGL LFLVMIVIAV VAAGIGYWKL TGEESDTLRK IVLEQCLPNQ QENQNPSPCA 120
  121 EVKPNAGYVV LKDRHGPLQY LLMPTYRING TESPLLTDPS TPNFFWLAWQ ARDFMSQKYG 180
  181 QPVPDRAVSL AINSRTGRTQ NHFHIHISCI RPDVREQLDN NLANISSRWL PLPGGLRGHE 240
  241 YLARRVTESE LVQRSPFMML AEEVPEAREH MGSYGLAMVR QSDNSFVLLA TQRNLLTLNR 300
  301 ASAEEIQDHQ CEILR

Type	Start	End	Confidence
Signal Peptide	1	25	0.38
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	38	0.51
Transmembrane Helix	39	56	0.56
Cytoplasmic	57	67	0.83
Transmembrane Helix	68	88	0.91
Non-Cytoplasmic	89	315	0.98