YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26110838, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	53	0.95
Transmembrane Helix	54	75	0.83
Non-Cytoplasmic	76	88	0.71
Transmembrane Helix	89	109	0.94
Cytoplasmic	110	117	0.63
Transmembrane Helix	118	136	0.90
Non-Cytoplasmic	137	142	0.71
Transmembrane Helix	143	162	0.92
Cytoplasmic	163	168	0.91
Transmembrane Helix	169	188	0.90
Non-Cytoplasmic	189	206	0.70
Transmembrane Helix	207	225	0.93
Cytoplasmic	226	231	0.80
Transmembrane Helix	232	253	0.90
Non-Cytoplasmic	254	279	0.81
Transmembrane Helix	280	302	0.77
Cytoplasmic	303	321	0.94
Transmembrane Helix	322	344	0.91
Non-Cytoplasmic	345	351	0.85
Transmembrane Helix	352	373	0.89
Cytoplasmic	374	382	0.66
Transmembrane Helix	383	403	0.90
Non-Cytoplasmic	404	417	0.79
Transmembrane Helix	418	440	0.87
Cytoplasmic	441	449	0.82
Transmembrane Helix	450	469	0.92
Non-Cytoplasmic	470	470	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIITEPLLS FVLQKQGIKS PPMDKKMNND NTDYVSNESG TLSRLFKLPQ HGTTVRTELI  60
   61 AGMTTFLTMV YIVFVNPQIL GAAQMDPKVV FVTTCLIAGI GSIAMGIFAN LPVALAPAMG 120
  121 LNAFFAFVVV GAMGISWQTG MGAIFWGAVG LFLLTLFRIR YWMISNIPLS LRIGITSGIG 180
  181 LFIALMGLKN TGVIVANKDT LVMIGDLSSH GVLLGILGFF IITVLSSRHF HAAVLVSIVV 240
  241 TSCCGLFFGD VHFSGVYSIP PDISGVIGEV DLSGALSLEL AGIIFSFMLI NLFDSSGTLI 300
  301 GVTDKAGLID SNGKFPNMNK ALYVDSVSSV AGAFIGTSSV TAYIESTSGV AVGGRTGLTA 360
  361 VVVGVMFLLV MFFSPLVAMV PPYATAGALI FVGVLMTSSL ARVNWDDFTE SVPAFITTVM 420
  421 MPFTFSITEG IALGFMSYCI MKVCTGRWRD LNLCVVVVAA LFALKIILVD