YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24053521, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSDMHSLLI AAILGVVEGL TEFLPVSSTG HMIIVGHLLG FEGDTAKTFE VVIQLGSILA  60
   61 VVVMFWRRLF GLIGIHFGRP LQHEGESKGR LTLIHILLGM IPAVVLGLLF HDTIKSLFNP 120
  121 INVMYALVVG GLLLIAAECL KPKEPRAPGL DDMTYRQAFM IGCFQCLALW PGFSRSGATI 180
  181 SGGMLMGVSR YAASEFSFLL AVPMMMGATA LDLYKSWGFL TTGDIPMFAV GFITAFVVAL 240
  241 IAIKTFLQLI KRISFIPFAI YRFIVAAAVY VVFF

Type	Start	End	Confidence
Cytoplasmic	1	7	0.91
Transmembrane Helix	8	34	0.79
Non-Cytoplasmic	35	50	0.83
Transmembrane Helix	51	70	0.95
Cytoplasmic	71	90	0.92
Transmembrane Helix	91	111	0.96
Non-Cytoplasmic	112	120	0.73
Transmembrane Helix	121	140	0.82
Cytoplasmic	141	190	0.51
Transmembrane Helix	191	211	0.71
Non-Cytoplasmic	212	224	0.52
Transmembrane Helix	225	247	0.87
Cytoplasmic	248	252	0.59
Transmembrane Helix	253	273	0.87
Non-Cytoplasmic	274	274	0.65