YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|227835767, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQINSNKKH SDRRKYFALL AVVLFIAFSG AYAYWSMELK DMISTDDAYV TGNADPISAQ  60
   61 VSGSVTVVNH KDTNYVRQGD ILVSLDKTDA TIALNKAKNN LANIVRQTNK LYLQDKQYSA 120
  121 EVASARIQYQ QSLEDYNRRV PLAKQGVISK EALEHTKDTL ISSKAALNAA IQAYKANKAL 180
  181 VMNTPLNRQP QVIEAADATK EAWLALKRTD IKSPVTGYIA QRSVQVGETV SPGQSLMAVV 240
  241 PARQMWVNAN FKETQLTDVR IGQSVNIISD LYGENVVFHG RVTGINMGTG NAFSLLPAQN 300
  301 ATGNWIKIVQ RVPVEVSLDP KELMEHPLRI GLSMTATIDT KNEDIAEMPD LASTVTSMPA 360
  361 YTSKALVIDT SPIEKEISNI ISHNGQL

Type	Start	End	Confidence
Signal Peptide	1	33	0.64
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	387	0.99