YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|237704535, gi...
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFWRPGITG KLFLAIFATC IVLLITMHWA VRISFERGFI DYIKHGNEQR LQMLGDALGE  60
   61 QYAQHGNWRF LRNNDRFVFQ ILRSLEHDNN EDKPGPGMPP HGWRTQFWVV DQNNKVLVGP 120
  121 RAPVPPDGTR RPIMVNGAEV GAVIASPVER LTRNTDINFD RQQRQTSWLI VALSTLLAAL 180
  181 ATFPLARGLL APVKRLVDGT HKLAAGDFTT RVAPTSEDEL GRLAEDFNQL ASTLEKNQQM 240
  241 RRDFMADISH ELRTPLAVLR GELEAIQDGV RKFTPETLAS LQAEVGTLTK LVDDLHQLSM 300
  301 SDEGALAYQK APVDLIPLLE VAGGAFRERF ASRGLKLQFS LPDSITVFGD RDRLMQLFNN 360
  361 LLENSLRYTD SGGSLKISAE QHDKTVRLTF ADSAPGVSDD QLQKLFERFY RTEGSRNRAS 420
  421 GGSGLGLAIC LNIVEAHNGR IIAAHSPFGG LSITVELPLE RDLQREV

Type	Start	End	Confidence
Cytoplasmic	1	9	0.63
Transmembrane Helix	10	31	0.79
Non-Cytoplasmic	32	167	0.84
Transmembrane Helix	168	186	0.72
Cytoplasmic	187	467	0.55