YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26248330, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGFGYWSK NQMSKLFWAM LSFITRLPVP RRWSQGLDFE HYSRGIITFP LIGLLLGAIS  60
   61 GLVFMVLQAW CGVPLAALFS VLVLALMTGG FHLDGLADTC DGVFSARSRD RMLEIMRDSR 120
  121 LGTHGGLALI FVVLAKILVL SELALRGEPI LASLAAACAV SRGTAALLMY RHRYAREEGL 180
  181 GNVFIGKIDG RQTCVTLGLA AIFAAVLLPG MHGVAAMVVT MVAIFILGQL LKRTLGGQTG 240
  241 DTLGAAIEFG ELVFLLALL

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.70
Transmembrane Helix	13	30	0.72
Cytoplasmic	31	45	0.83
Transmembrane Helix	46	67	0.91
Non-Cytoplasmic	68	74	0.64
Transmembrane Helix	75	96	0.87
Cytoplasmic	97	120	0.85
Transmembrane Helix	121	140	0.96
Non-Cytoplasmic	141	149	0.77
Transmembrane Helix	150	170	0.91
Cytoplasmic	171	189	0.84
Transmembrane Helix	190	208	0.79
Non-Cytoplasmic	209	211	0.50
Transmembrane Helix	212	231	0.81
Cytoplasmic	232	259	0.52