YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26247919, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPSQHAEQF QSQLANYVPQ FTPQFWPVWL IIAGLLLVGM WLVLGLHALL RARGVKKSAT  60
   61 DHGERIYLYS KAVRLWHWSN ALLFVLLLAS GLINHFALVG ATAVKSLVAV HEVCGFLLLA 120
  121 CWLGFVLINA VGGNGHHYRI RRQGWLERAA KQTRFYLFGI MQGEEHPFPA TTQSKFNPLQ 180
  181 QVAYVGVMYG LLPLLLLTGL LCLYPQAVGD MFPGVRYWLL QAHFALAFIS LFFIFGHLYL 240
  241 CTTGRTPHET FKSMVDGYHR H

Type	Start	End	Confidence
Non-Cytoplasmic	1	25	0.98
Transmembrane Helix	26	50	0.88
Cytoplasmic	51	74	0.98
Transmembrane Helix	75	99	0.84
Non-Cytoplasmic	100	112	0.75
Transmembrane Helix	113	133	0.92
Cytoplasmic	134	181	0.95
Transmembrane Helix	182	204	0.89
Non-Cytoplasmic	205	219	0.82
Transmembrane Helix	220	241	0.92
Cytoplasmic	242	261	0.93