YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26247499, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	40	0.46
Transmembrane Helix	41	66	0.86
Cytoplasmic	67	75	0.46
Transmembrane Helix	76	100	0.77
Non-Cytoplasmic	101	107	0.57
Transmembrane Helix	108	132	0.80
Cytoplasmic	133	141	0.48
Transmembrane Helix	142	163	0.67
Non-Cytoplasmic	164	164	0.49
Transmembrane Helix	165	183	0.88
Cytoplasmic	184	218	0.87
Transmembrane Helix	219	238	0.89
Non-Cytoplasmic	239	255	0.88
Transmembrane Helix	256	278	0.89
Cytoplasmic	279	315	0.94
Transmembrane Helix	316	350	0.77
Non-Cytoplasmic	351	368	0.44
Transmembrane Helix	369	391	0.85
Cytoplasmic	392	406	0.41
Transmembrane Helix	407	431	0.63
Non-Cytoplasmic	432	468	0.69
Transmembrane Helix	469	489	0.84
Cytoplasmic	490	496	0.77
Transmembrane Helix	497	518	0.91
Non-Cytoplasmic	519	531	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLNIKTSLI ISKVRETIME ISWGRALWRN FLGQSPDWYK LALIIFLIVN PLIFLISPFV  60
   61 AGWLLVAEFI FTLAMALKCY PLLPGGLLAI EAVFIGMTSA EHVREEVAAN LEVLLLLMFM 120
  121 VAGIYFMKQL LLFIFTRLLL SIRSKMLLSL SFCVAAAFLS AFLDALTVVA VVISVAVGFY 180
  181 GIYHRVASSR TEDTDLQDDS HIDKHYKVVL EQFRGFLRSL MMHAGVGTAL GGVMTMVGEP 240
  241 QNLIIAKAAG WHFGDFFLRM SPVTVPVLIC GLLTCLLVEK LRWFGYGETL PEKVREVLQQ 300
  301 FDDQSRNQRT RQDKIRLIVQ AIIGVWLVTA LALHLAEVGL IGLSVIILAT SLTGVTDEHA 360
  361 IGKAFTESLP FTALLTVFFS VVAVIIDQQL FSPIIQFVLQ ASEHAQLSLF YIFNGLLSSI 420
  421 SDNVFVGTIY INEAKAAMES GAITLKQYEL LAVAINTGTN LPSVATPNGQ AAFLFLLTSA 480
  481 LAPLIRLSYG RMVWMALPYT LVLTLVGLLC VEFTLAPVTE WFMQMGWIAT L