YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26247265, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKIMILLSL LMFLPLTAIS KPLIPIMKTL FTDVTGTVPD AEEIAHKAEL FRQQTGVAPF  60
   61 IVVLPDINNE ASLRQNGKAM LAHAASSMSN VKGSVLLLFT TREPRLIMIT NGQVESSMDD 120
  121 KHLGLLVENH TLAYLHADLW YQGINNALAV LQAQILKQPT PPLTYYPHPG QQHENDPPGS 180
  181 TTTLGLFAWA VAFIVFAAFF NYTTRLYYAL KFAVAMAVAN MGYQALCLYI DNSFAITRIS 240
  241 PLWAGLIGVC TFIAALLWTS KR

Type	Start	End	Confidence
Signal Peptide	1	20	0.98
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	180	0.99
Transmembrane Helix	181	200	0.93
Cytoplasmic	201	207	0.73
Transmembrane Helix	208	230	0.86
Non-Cytoplasmic	231	238	0.78
Transmembrane Helix	239	259	0.94
Cytoplasmic	260	262	0.84