YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26107594, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTKKCDNTY NCPYRLKNRI DMTNLPKFST ALLHPRYWLT WLGIGVLWLV VQLPYPVIYR  60
   61 LGCGLGKLAL RFMKRRAKIV HRNLELCFPE MSEQERRKMV VKNFESVGMG LMETGMAWFW 120
  121 PDRRIARWTE VIGMEHIRDV QAQKRGILLV GIHFLTLELG ARQFGMQEPG IGVYRPNDNP 180
  181 LIDWLQTWGR LRSNKSMLDR KDLKGMIKAL KKGEVVWYAP DHDYGPRSSV FVPLFAVEQA 240
  241 ATTTGTWMLA RMSGACLVPF VPRRKPDGKG YQLIILPPEC SPPLDDAETT AAWMNKVVEK 300
  301 CIMMAPEQYM WLHRRFKTRP EGVPSRY

Type	Start	End	Confidence
Cytoplasmic	1	36	0.53
Transmembrane Helix	37	59	0.74
Non-Cytoplasmic	60	327	0.63