YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26247049, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.92
Transmembrane Helix	6	28	0.94
Cytoplasmic	29	45	0.96
Transmembrane Helix	46	66	0.94
Non-Cytoplasmic	67	83	0.87
Transmembrane Helix	84	107	0.90
Cytoplasmic	108	115	0.85
Transmembrane Helix	116	136	0.93
Non-Cytoplasmic	137	152	0.90
Transmembrane Helix	153	174	0.89
Cytoplasmic	175	189	0.88
Transmembrane Helix	190	210	0.93
Non-Cytoplasmic	211	233	0.90
Transmembrane Helix	234	254	0.92
Cytoplasmic	255	260	0.85
Transmembrane Helix	261	282	0.90
Non-Cytoplasmic	283	297	0.76
Transmembrane Helix	298	315	0.82
Cytoplasmic	316	496	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHSATIIIGI VCGWIFILTT VQFLYLLIIK RDLQPTGWCS FMEKDYLGIS STVLVSLLFG  60
   61 LALVLVNSWF NQPTVEEVVP RSTYLMVMIA LFFIDTVAFI FMQLYFIYDR RQFSNCILSL 120
  121 AFLSCLIYFI KTVIIIQQII EGRLTSSVVQ NDIAIYYLFR QMSLCILIFL ALVNKVSENT 180
  181 KQRNLFSKKM TLCISLFFVV GGPIVAHILS SHYESYNLHI AELTNENDQV VWKASYVTIM 240
  241 IFMWLTLLSV NLYFNGLRCD IWNGVTVIAF CAVLYNVSLL FMSRYSVSIW YISRTIEVVS 300
  301 KLTVMVIFMC HIFSALRVTK DIAHRDSLTN IFNRNYFFNE LTVQSASAKK TPYCVMIMDI 360
  361 DHFKKVNDTW GHPVGDQVIK TVVSIIGKSI RPDDLFARVG GEEFGVLLTD IDTERAKALA 420
  421 ERIRENVERL TGDNPEYAIP QKVTISIGAV VTQKNELNPK EIYQLADNAL YEAKETGRNK 480
  481 VVVKEAEILI NRKDDE