YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26107378, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRSPVKDLT VLSRWRYSWR ILDDNEAQKM KKTAIAIAVA LAGFATVAQA APKDNTWYTG  60
   61 AKLGWSQYHD TGFIPNNGPT HENQLGAGAF GGYQVNPYVG FEMGYDWLGR MPYKGDNING 120
  121 AYKAQGVQLT AKLGYPITDD LDIYTRLGGM VWRADTKANV PGGASFKDHD TGVSPVFAGG 180
  181 VEYAITPEIA TRLEYQWTNN IGDAHTIGTR PDNGMLSLGV SYRFGQGEVA PVVAPAPAPA 240
  241 PEVQTKHFTL KSDVLFTFNK ATLKPEGQAA LDQLYSQLSN LDPKDGSVVV LGYTDRIGSD 300
  301 AYNQALSERR AQSVVDYLIS KGIPADKISA RGMGESNPVT GNTCDNVKQR AALIDCLAPD 360
  361 RRVEIEVKGI KDVVTQPQA

Type	Start	End	Confidence
Signal Peptide	1	50	0.94
N-region	1	41
H-region	42	47
C-region	48	50
Cleavage Site	50	51
Non-Cytoplasmic	51	379	0.99