YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|117623122, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRFTYICIN KIIVIIRLNI GNLYLINTID IVTLFARCSL LINCFSGGCG KNSTHLLIFK  60
   61 IYFYLDNQIF TPYLHKNHAS YGPISQARYD LYQFLIYNAL LVSRRRLNKE RVSVKADNPF 120
  121 DLLLPAAMAK VAEEAGVYKA TKHPLKTFYL AITAGVFISI AFVFYITATT GTGTMPFGMA 180
  181 KLVGGICFSL GLILCVVCGA DLFTSTVLIV VAKASGRITW GQLAKNWLNV YFGNLVGALL 240
  241 FVLLMWLSGE YMTANGQWGL NVLQTADHKV HHTFIEAVCL GILANLMVCL AVWMSYSGRS 300
  301 LMDKAFIMVL PVAMFVASGF EHSIANMFMI PMGIVIRDFA SPEFWTAVGS APENFSHLTV 360
  361 MNFITDNLIP VTIGNIIGGG LLVGLTYWVI YLRENDHH

Type	Start	End	Confidence
Cytoplasmic	1	147	0.90
Transmembrane Helix	148	168	0.96
Non-Cytoplasmic	169	185	0.79
Transmembrane Helix	186	211	0.89
Cytoplasmic	212	226	0.94
Transmembrane Helix	227	249	0.91
Non-Cytoplasmic	250	272	0.92
Transmembrane Helix	273	294	0.94
Cytoplasmic	295	304	0.83
Transmembrane Helix	305	325	0.91
Non-Cytoplasmic	326	367	0.93
Transmembrane Helix	368	391	0.91
Cytoplasmic	392	398	0.93