YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|191173671, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNLKSDTRG LHMNKNRGFT PLAVVLMLSG SLALTGCDDK QAQQGGQQMP AVGVVTVKTE  60
   61 PLQITTELPG RTSAYRIAEV RPQVSGIILK RNFKEGSDIE AGVSLYQIDP ATYQAAYDSA 120
  121 KGDLAKAQAA ANIAQLTVNR YQKLLGTQYI SKQEYDQALA DAQQANAAVT AAKAAVETAR 180
  181 INLAYTKVTS PISGRIGKSN VTEGALVQNG QATALATVQQ LDPIYVDVTQ SSNDFLRLKQ 240
  241 ELANGTLKQE NGKAKVSLIT SDGIKFPQDG TLEFSDVTVD QTTGSITLRA IFPNPDHTLL 300
  301 PGMFVRARLE EGLNPNAILV PQQGVTRTPR GDATVLVVGA DDKVETRPIV ASQAIGDKWL 360
  361 VTEGLKAGDR VVISGLQKVR PGVQVKAQEV TADNNQQAAS GAQPEQSKS

Type	Start	End	Confidence
Signal Peptide	1	33	0.94
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	409	0.99