YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|227838660, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTILPRHKDV AKSRLKMSNP WHLLAVGFGS GLSPIVPGTM GSLAAIPFWY LMTFLPWQLY  60
   61 SLVVMLGICI GVYLCHQTAK DMGVHDHGSI VWDEFIGMWI TLMALPTNDW QWVTAGFVIF 120
  121 RILDMWKPWP IRWFDRNVHG GMGIMIDDIV AGVISAGILY FIGHHWPLGI LS

Type	Start	End	Confidence
Cytoplasmic	1	20	0.95
Transmembrane Helix	21	45	0.89
Non-Cytoplasmic	46	55	0.78
Transmembrane Helix	56	76	0.92
Cytoplasmic	77	88	0.78
Transmembrane Helix	89	123	0.65
Non-Cytoplasmic	124	142	0.47
Transmembrane Helix	143	164	0.88
Cytoplasmic	165	172	0.40