YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26246122, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVVTGIQDA LTEGNMLSFL WDLASFIVAL GVLITVHEFG HFWVARRCGV RVERFSIGFG  60
   61 KALWRRTDKL GTEYVIALIP LGGYVKMLDE RAEPVVPELR HHAFNNKSVG QRAAIIAAGP 120
  121 VANFIFAIFA YWLVFIIGVP GVRPVVGEIA ANSIAAEAQI APGTELKAVD GIETPDWDAV 180
  181 RLQLVDKIGD ESTTITVAPF GSDQRRDVKL DLRHWAFEPD KEDPVSSLGI RPRGPQIEPV 240
  241 LENVQPNSAA SKAGLQAGDR IVKVDGQPLT QWVTFVMLVR DNPGKSLALE IERQGSPLSL 300
  301 TLIPESKPGK GKAIGFVGIE PKVIPLPDEY KVVRQYGPFN AIVEATDKTW QLMKLTVSML 360
  361 GKLITGDVKL NNLSGPISIA KGAGMTAELG VVYYLPFLAL ISVNLGIINL FPLPVLDGGH 420
  421 LLFLAIEKIK GGPVSERVQD FCYRIGSILL VLLMGLALFN DFSRL

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.55
Transmembrane Helix	19	44	0.78
Cytoplasmic	45	69	0.53
Transmembrane Helix	70	84	0.37
Non-Cytoplasmic	85	112	0.76
Transmembrane Helix	113	135	0.84
Cytoplasmic	136	390	0.86
Transmembrane Helix	391	413	0.83
Non-Cytoplasmic	414	440	0.74
Transmembrane Helix	441	462	0.89
Cytoplasmic	463	465	0.68