YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|170520306, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKYRLISAF VLIPVVIAAL FLLPPVGFAI VTLVVCMLAA WEWGQLSGFT TRSQRVWLAV  60
   61 LCGLLLALML FLLPEYHRNI HQPLVEISLW ASLGWWIVAL LLVLFYPGSA AIWRNSKTLR 120
  121 IIFGVLTIVP FFWGMLALRA WHYDENHYSG AIWLLYVMIL VWGADSGAYM FGKLFGKHKL 180
  181 APKVSPGKTW QGFIGGLATA AVISWGYGMW VNLDVAPVTL LICSIVAALA SVLGDLTESM 240
  241 FKREAGIKDS GHLIPGHGGI LDRIDSLTAA VPVFACLLLL VFRTL

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.58
Transmembrane Helix	7	41	0.79
Cytoplasmic	42	55	0.75
Transmembrane Helix	56	74	0.96
Non-Cytoplasmic	75	88	0.83
Transmembrane Helix	89	110	0.87
Cytoplasmic	111	120	0.74
Transmembrane Helix	121	141	0.93
Non-Cytoplasmic	142	150	0.82
Transmembrane Helix	151	172	0.92
Cytoplasmic	173	188	0.90
Transmembrane Helix	189	209	0.92
Non-Cytoplasmic	210	215	0.80
Transmembrane Helix	216	237	0.88
Cytoplasmic	238	263	0.87
Transmembrane Helix	264	282	0.69
Non-Cytoplasmic	283	285	0.54