YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91070727, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.89
Transmembrane Helix	12	32	0.89
Non-Cytoplasmic	33	48	0.88
Transmembrane Helix	49	71	0.89
Cytoplasmic	72	86	0.81
Transmembrane Helix	87	105	0.92
Non-Cytoplasmic	106	112	0.75
Transmembrane Helix	113	133	0.92
Cytoplasmic	134	182	0.85
Transmembrane Helix	183	211	0.78
Non-Cytoplasmic	212	219	0.51
Transmembrane Helix	220	240	0.90
Cytoplasmic	241	258	0.55
Transmembrane Helix	259	273	0.59
Non-Cytoplasmic	274	307	0.85
Transmembrane Helix	308	328	0.90
Cytoplasmic	329	340	0.88
Transmembrane Helix	341	364	0.85
Non-Cytoplasmic	365	376	0.75
Transmembrane Helix	377	396	0.96
Cytoplasmic	397	415	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMRLSLPRLK MPRLPGFSIL VWISTALKGW VMGSREKDTD SLIMYDRTLL WLTFGLAAIG  60
   61 FIMVTSASMP IGQRLTNDPF FFAKRDGVYL ILAFILAIIT LRLPMEFWQR YSATMLLGSI 120
  121 ILLMIVLVVG SSVKGASRWI DLGLLRIQPA ELTKLSLFCY IANYLVRKGD EVRNNLRGFL 180
  181 KPMGVILVLA VLLLAQPDLG TVVVLFVTTL AMLFLAGAKL WQFIAIIGMG ISAVVLLILA 240
  241 EPYRIRRVTA FWNPWEDPFG SGYQLTQSLM AFGRGELWGQ GLGNSVQKLE YLPEAHTDFI 300
  301 FAIIGEELGY VGVVLALLMV FFVAFRAMSI GRKALEIDHR FSGFLACSIG IWFSFQALVN 360
  361 VGAAAGMLPT KGLTLPLISY GGSSLLIMST AIMMLLRIDY ETRLEKAQAF VRGSR