YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26245981, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHNRPQPEM GKSAFILWEI ALISVCRFGE YMQYWGKIIG VAVALIMGGG FWGVVLGLLI  60
   61 GHMFDKARSR KMAWFANQRE RQALFFATTF EVMGHLTKSK GRVTEADIHI ASQLMDRMNL 120
  121 HGASRTAAQN AFRVGKSDNY PLREKMRQFR SVCFGRFDLI RMFLEIQIQA AFADGSLHPN 180
  181 ERAVLYVIAE ELGISRAQFD QFLRMMQGGA QFGGGYQQQS GGGNWQQAQR GPTLEDACNV 240
  241 LGVKPTDDAT TIKRAYRKLM SEHHPDKLVA KGLPPEMMEM AKQKAQEIQQ AYELIKQQKG 300
  301 FK

Type	Start	End	Confidence
Cytoplasmic	1	13	0.84
Transmembrane Helix	14	31	0.89
Non-Cytoplasmic	32	38	0.76
Transmembrane Helix	39	62	0.92
Cytoplasmic	63	302	0.92