YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NHAA_ECOUT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.84
Transmembrane Helix	12	33	0.87
Non-Cytoplasmic	34	58	0.90
Transmembrane Helix	59	79	0.87
Cytoplasmic	80	93	0.86
Transmembrane Helix	94	115	0.92
Non-Cytoplasmic	116	125	0.82
Transmembrane Helix	126	145	0.90
Cytoplasmic	146	153	0.70
Transmembrane Helix	154	175	0.87
Non-Cytoplasmic	176	180	0.68
Transmembrane Helix	181	201	0.76
Cytoplasmic	202	205	0.50
Transmembrane Helix	206	220	0.55
Non-Cytoplasmic	221	223	0.35
Transmembrane Helix	224	239	0.70
Cytoplasmic	240	257	0.76
Transmembrane Helix	258	276	0.89
Non-Cytoplasmic	277	286	0.73
Transmembrane Helix	287	312	0.86
Cytoplasmic	313	327	0.87
Transmembrane Helix	328	350	0.92
Non-Cytoplasmic	351	359	0.76
Transmembrane Helix	360	380	0.95
Cytoplasmic	381	388	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHLHRFFSS DASGGIILII AAVLAMIMAN SGATSGWYHD FLETPVQLRV GTLEINKNML  60
   61 LWINDALMAV FFLLVGLEVK RELMQGSLAS LRQAAFPVIA AIGGMIVPAL LYLAFNYADP 120
  121 ITREGWAIPA ATDIAFALGV LALLGSRVPL ALKIFLMALA IIDDLGAIII IALFYTNDLS 180
  181 MASLGVAAVA IAVLVVLNLC GVRRTGVYIL VGVVLWTAVL KSGVHATLAG VIVGFFIPLK 240
  241 EKHGRSPAKR LEHVLHPWVA YLILPLFAFA NAGVSLQGVT LEGLTSILPL GIIAGLLIGK 300
  301 PLGISLFCWL ALRLKLAHLP EGTTYQQIMA VGILCGIGFT MSIFIASLAF GSVDPELINW 360
  361 AKLGILVGSI SSAVIGYSWL RVRLRPSV