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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|25029487, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTRTEWSPV SSTPMNPGQP KGQRSRIVTP TPPAPVPETR KKQPPRNPAP SGEDRSSLKS  60
   61 APTGAVYRPA PKEAGQTRQE QPAPVTPATP TAPATPAAPA ASAKAVAPAS TPASTPARTT 120
  121 SGTTAAPAGV VPAEAAAENT ATVNEAVPGT ASRSAAQSDS RDASGSAGGD TTDGGDDHRG 180
  181 GGTALATDDR EDPPARRETS DADVVRSTGS MAVATLLSRI TGFLRTVMIG AALSPAIASA 240
  241 FNTANTLPNL ITEIVLGAVL TSLVVPVLTR AEREDADRGS GFFRRLLTLS VTLLGGVTLL 300
  301 SVIGAPLLTR MMLDVDGEVN VGMSTAFAYW LLPQIFFYGL FSLFMAVLNT REIFKPGAWA 360
  361 PVVNNVISLV VLGTYMVMPW RLAQDAQVGL FDPQIVFLGV GTTLGVVVQT LIMVPYLRRA 420
  421 GIDLRPLWGL DDRLKQFGGM AMAIVVYVAI SQLGYVITTR IASLADAAAP FIYQQHWLLL 480
  481 QVPYGIIGVT LLTAIMPRLS RNAADGDDRA VVADLGLGSK LTFIALIPIV VFFTVFGVPI 540
  541 ANALFQWGEF DAASANILGW TLSFSAFTLL PYALVLLHLR VFYAREEAWT PTFIIAGITV 600
  601 TKIVLSLAAP VLSNSPERVV VLLGAANGFG FVAGAVIGAY LLRRKLGLLG MRSVLKTSLW 660
  661 ALGSALVGAG VAWLLGMGIE AVMGDFLFGT LGSFGYLIYL GVIGVVFLIG TGAVLSRSRL 720
  721 PEVQNLGKAL ARIPGMGRFI RPNEELSLDV GEVSEQELST QIIVANEFAS TPVPPPMSAG 780
  781 IVRGPRLVPG APVSDGAFRL LADHGGVPGA RFWQAREAET GREVALIFVD TSGNAPYAPL 840
  841 TPAAAAGVAY EVQRRTKKLA ALNSPAIAPN IRTRAYRNGC LIVADWIPGS SLARVAEDGA 900
  901 DPRAASYAMA DLTDAMADAH AAGIPLGLDN KSRIRINTDG HAVLAFPAVL PEASRERDVA 960
  961 SLAAALDMLI DASSAPADVT VLCSEARAYN AKTDDTSDET VDPETLHGLA DALRACGLHT1020
 1021 GDEEPAQLQV DTERTPRPTR RSGFGAPEYS VKMMALIALV VFLLVSMVAV VTAFLTSLIS1080
 1081 ADNEESPLAS ADTVVTSPAG SGDTEDTDIA EPVGPPLYRS LSSAHEWDEG RRDEVDTVTD1140
 1141 GDTSTAWTST GSEGLLITLE DPTQLAHVIL TPGTGADSSV TSTVKLFAFT TDAPRSLSSG1200
 1201 IEIGEIIFAS RSITHTIEQP DNLPANVESV VIWVEEVTST DTSEDDPVMQ IAEVEMVGW

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle