YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25028823, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	24	0.95
Transmembrane Helix	25	45	0.88
Non-Cytoplasmic	46	55	0.67
Transmembrane Helix	56	77	0.88
Cytoplasmic	78	84	0.83
Transmembrane Helix	85	106	0.91
Non-Cytoplasmic	107	115	0.75
Transmembrane Helix	116	136	0.91
Cytoplasmic	137	142	0.76
Transmembrane Helix	143	165	0.86
Non-Cytoplasmic	166	175	0.82
Transmembrane Helix	176	194	0.89
Cytoplasmic	195	200	0.74
Transmembrane Helix	201	222	0.91
Non-Cytoplasmic	223	249	0.88
Transmembrane Helix	250	274	0.85
Cytoplasmic	275	327	0.81
Transmembrane Helix	328	349	0.87
Non-Cytoplasmic	350	355	0.56
Transmembrane Helix	356	377	0.87
Cytoplasmic	378	386	0.70
Transmembrane Helix	387	408	0.85
Non-Cytoplasmic	409	416	0.65
Transmembrane Helix	417	438	0.93
Cytoplasmic	439	644	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTQTPIRTV HPVDQVPPAP KLAALGLQHV LAFYAGAVIV PLLIAQSLNL DAATTIHLIN  60
   61 ADLLTCGIAT LIQSVGIGRH IGVRLPIVQG VTTTAVAPII AIGLGVTDGE GGVASLPAIY 120
  121 GAVIVAGLFT FFAAPVFTRF LRFFPPVVTG TVLLVMGTSL LSVSANDFVN YADGVPAARD 180
  181 LAYGFGTLLI IILAQRFLRG FLGTLAVLLG LVVGTVTALL LGDANLDEVS NADAFGITTP 240
  241 FYFGLPEFNL VAIFSMIIVM IITMVETTGD VFATGEIVRK RTRRYDITRA LRADGLSTFI 300
  301 GGIMNSFPYT CFAQNVGLVR ITGVKSRWVA ASAAVFMIIL GVLPKAGAIV ASIPSPVLGG 360
  361 ASLALFANVA WVGLQTIAKS DLRDSRNAVI VTSALGLAML VTFRPDIAQA FPEWARIFVS 420
  421 SGMSVGAITA IILNLLFFHV GRQTGANVAV SGSGEKLTLD QINAMDREQF VDTLSPLFNS 480
  481 RTWPLEIAWE SRPFANVTAL REAIQISVLT APLEAREDLI HDYPDMAQLL LADQDEAAEI 540
  541 SRDRGSIGLE ELDDVDRDKL LTVTSNYRDR FGMPYVAYYD TTDTVDDVVA EGLRRLDNSD 600
  601 EQEHRQALSE IIEIANDRFD IVLEDANPAR TAFDRKFTDT DFMS