YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23493480, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSPMRVTRR PLVPTIRCFT PTTLLRPGGS RVYRVNEQTY LLASAVEPVA AENMSWTQTL  60
   61 VLSVVQGLTE FLPISSSGHL RIISELFWGA DAGASFTAVV QLGTEAAVLV YFAREIWQIL 120
  121 TGWFAGVFNK DRRGRDYKMG WMIIVATIPV VVLGVLGKDL IRDALRNMWI TATVLVLFSF 180
  181 VFILAEKVGK KDRGYDELNM RDALVMGFAQ CLALIPGVSR SGGTISAGLF MGLNREVAAK 240
  241 FSFLLAIPAV LGSGLYSLPD AFDPSTGQAA SGLQLTIGTL VAFLVGYASI AWLMKFVANH 300
  301 SFSWFAAYRI PAGLLVMLLL WLGYLNP

Type	Start	End	Confidence
Cytoplasmic	1	138	0.65
Transmembrane Helix	139	157	0.96
Non-Cytoplasmic	158	167	0.56
Transmembrane Helix	168	185	0.96
Cytoplasmic	186	203	0.70
Transmembrane Helix	204	224	0.63
Non-Cytoplasmic	225	236	0.43
Transmembrane Helix	237	259	0.84
Cytoplasmic	260	269	0.45
Transmembrane Helix	270	294	0.84
Non-Cytoplasmic	295	304	0.42
Transmembrane Helix	305	325	0.94
Cytoplasmic	326	327	0.47