YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25027849, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNFETFLWV AFPWLCIAAF IIGISWRWRT DQFGWTTHSS QIYESKLLRL SSPLFHWGMV  60
   61 FVVIGHLMGL AIPKSWTAAV GISDAAYHLI ATIPGTIAGV AVILGLIGLL YRRIANRTVF 120
  121 LSTSKSDKVM YLLLGAAILS GFIATVSTQV FGGPHGYDYR ETISPWLRQL LIFNAQPELM 180
  181 ADVPWEFKVH VVAGFTLIAV WPFTRLVHAF SAPVGYTTRP YVVYRSRDIT ARPVRHDSGW 240
  241 DPVRSVKAQH DDEARWHGA

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.95
Transmembrane Helix	7	28	0.92
Cytoplasmic	29	52	0.88
Transmembrane Helix	53	72	0.90
Non-Cytoplasmic	73	87	0.84
Transmembrane Helix	88	110	0.94
Cytoplasmic	111	128	0.94
Transmembrane Helix	129	151	0.90
Non-Cytoplasmic	152	188	0.94
Transmembrane Helix	189	209	0.83
Cytoplasmic	210	259	0.94