YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25026942, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVRNPDREA IRHGYITTEA LRQRPAYPTW AMKLTMAITG LIFGGFVLVH MIGNLKFFMP  60
   61 DYGADSTHPG ERQIDVYGSF LREIGEPLFP YESILWILRI ILLVALVLHI YCAFALTSRS 120
  121 RHSRGKFSRT GMMGGYNTFA TRTMLVTGIV LLAFIIFHVL DLTVGVQPAA PETFEHGAVY 180
  181 ANLIATFSRW PVAIWYIIAN LVLFVHLSHG IWVAVSDLGI TGRRWRAILL AVAYIVPALV 240
  241 LIGNVSIPLV IALGWIS

Type	Start	End	Confidence
Cytoplasmic	1	29	0.99
Transmembrane Helix	30	53	0.89
Non-Cytoplasmic	54	94	0.98
Transmembrane Helix	95	117	0.94
Cytoplasmic	118	137	0.94
Transmembrane Helix	138	160	0.92
Non-Cytoplasmic	161	191	0.96
Transmembrane Helix	192	215	0.88
Cytoplasmic	216	227	0.89
Transmembrane Helix	228	252	0.88
Non-Cytoplasmic	253	257	0.75