YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25026734, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNPIPRFSP LPIPWVRAPT ARVMTVQEQQ QQKNLQADLA RMTVVQQDSA PPSQSMTFRA  60
   61 AWDDIVRGFK QHELWLQLGW QDIKQRYRRS VLGPLWITIA TGVMAVALGL LYSVLFKIPL 120
  121 AEFLPHVTVG LIIWNFISGC IKEGADIFID NEGLIKQLPS ALSVHVYRLV WKQALFLGHN 180
  181 LVIWVILMLI FPRPLGWDVL LIIPGMFLLI VNGVWVAMFF GIIATRYRDV SPLLEAGTQL 240
  241 LFYVTPIVWM TSTLQNHSEE MGGRARLAEL NPLYHYLEVV RAPMIGSDLP AYHWWIVLGF 300
  301 TVAGLGLALL AMRQWRFRVS YWV

Type	Start	End	Confidence
Cytoplasmic	1	91	0.98
Transmembrane Helix	92	115	0.89
Non-Cytoplasmic	116	122	0.73
Transmembrane Helix	123	141	0.83
Cytoplasmic	142	174	0.82
Transmembrane Helix	175	192	0.93
Non-Cytoplasmic	193	199	0.74
Transmembrane Helix	200	223	0.91
Cytoplasmic	224	232	0.79
Transmembrane Helix	233	253	0.81
Non-Cytoplasmic	254	290	0.91
Transmembrane Helix	291	312	0.93
Cytoplasmic	313	323	0.87