YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24378407, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.93
Transmembrane Helix	19	41	0.90
Non-Cytoplasmic	42	55	0.75
Transmembrane Helix	56	77	0.84
Cytoplasmic	78	85	0.79
Transmembrane Helix	86	108	0.88
Non-Cytoplasmic	109	141	0.93
Transmembrane Helix	142	162	0.93
Cytoplasmic	163	181	0.91
Transmembrane Helix	182	205	0.89
Non-Cytoplasmic	206	213	0.83
Transmembrane Helix	214	234	0.74
Cytoplasmic	235	250	0.61
Transmembrane Helix	251	273	0.73
Non-Cytoplasmic	274	309	0.91
Transmembrane Helix	310	330	0.87
Cytoplasmic	331	342	0.79
Transmembrane Helix	343	361	0.91
Non-Cytoplasmic	362	371	0.64
Transmembrane Helix	372	392	0.90
Cytoplasmic	393	412	0.89
Transmembrane Helix	413	435	0.92
Non-Cytoplasmic	436	729	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNYKQLFSF EFWQKFGKCL MVVIAVMPAA GLMVSIGNSL ALIDPKSTLL VTVANIIAQI  60
   61 GWGVINNLHI LFAVAIGGSW AKERAGGAFA AALAFILINL ITGNFYGISL EMIADKTSYV 120
  121 HNIFGGKMHV ADYFINVLGQ PALNMGVFVG IISGFVGATA YNKYYNFRKL PDVLSFFNGK 180
  181 RFVPFVVIVR STIVALILSV FWPIVQSGIN GFGMWIASSQ HTAPFLAPFL YGTLERLLLP 240
  241 FGLHHMLTIP MNYTQLGGTY VVLTGAQAGK HVLGQDPLWL AWVQDLIHLK GAGHMSQYHH 300
  301 LLTSVTPARF KVGQMIGSSG ILMGLTLAMY RNVDPDKKEK YKGMFLSAAV AVFLTGVTEP 360
  361 LEYMFMFAAL PLYLVYAVVQ GLAFASADLI HLRVHSFGNI EFLTRTPMAI KAGLAMDIVN 420
  421 FIVVSVVFGV AMYFITNFMI KKFNLATSGR NGNYDTGDDA SDETASNSNA GTANANSQIV 480
  481 KIINLLGGKE NISDVDACMT RLRITVTDVA KVGDEAAWKK AGAMGLIVKG NGVQAVYGPK 540
  541 ADVLKSDIQD LLDSGVDIPK TDVTALEEDK TADVSFKGVT EEIATVADGQ VLPITQVHDP 600
  601 VFSQKMMGDG FAVEPENGNI YSPVAGLVTS VFPTKHALGL LTDDGLEVLV HVGLDTVALN 660
  661 GAPFSAKVKD GQRVALGDLL LVADLEAIKS ADRETTVIVA FTNTAELKSV TLEKTGQQAA 720
  721 KTVVAKVEL