YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24380379, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	107	0.98
Transmembrane Helix	108	129	0.90
Non-Cytoplasmic	130	158	0.83
Transmembrane Helix	159	177	0.90
Cytoplasmic	178	185	0.74
Transmembrane Helix	186	205	0.88
Non-Cytoplasmic	206	231	0.90
Transmembrane Helix	232	254	0.87
Cytoplasmic	255	261	0.86
Transmembrane Helix	262	284	0.86
Non-Cytoplasmic	285	289	0.52
Transmembrane Helix	290	304	0.54
Cytoplasmic	305	308	0.36
Transmembrane Helix	309	331	0.83
Non-Cytoplasmic	332	345	0.50
Transmembrane Helix	346	368	0.81
Cytoplasmic	369	377	0.57
Transmembrane Helix	378	396	0.59
Non-Cytoplasmic	397	405	0.52
Transmembrane Helix	406	435	0.72
Cytoplasmic	436	444	0.61
Transmembrane Helix	445	467	0.91
Non-Cytoplasmic	468	655	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKFEKDAKV LLDAIGGKEN VSAVTHCATR MRFVLNDESK ADVKTIEAIP AVKGTFTNAG  60
   61 QFQIIIGNDV PLFYNDFTAV SGIEGVSKET AKSAAKSHQN PIQRVMTLLA EIFTPIIPAI 120
  121 IVGGLILGFR NVIDQVQWGF LDGQTIAQHS QFWSGISSFL WLPGEAIFQF LPVGIVWSVS 180
  181 RKMGTSQILG IVLGICLVSP QLLNAYNVAS TPAAEIAKKW VWDFGFFTVR RIGYQGQVIP 240
  241 ALLAGLSLSY LEIFWRKKIP EVVSMIFVPF LSLIPALILA HTVLGPIGWT IGQWISTIVY 300
  301 AGLTGPVKWL FGAIFGALYA PFVITGLHHM TNAIDTQLVA DTGGTGLWPM IALSNIAQGS 360
  361 AVFAYYLMNR HEEREAQVSL PATISAYLGV TEPALFGVNI KYVYPLVAGM IGSSIAGFLS 420
  421 VTFNVTANAI GIGGLPGILS IKVKYMLPFF IIMLVAIAVP MVLTVFFRRI NFLTKSEDEA 480
  481 HQEKTETAEI SASEKTNEPA VGTTFEIKSP LKGQVKPLSE AVDPVFAQGV MGQGVLIDPS 540
  541 EGLLTSPVNG VVSVLFPTKH ALGLVTDQGL ELLIHIGMDT VNLEGKGFET YVKQGDTIKV 600
  601 GDKLIRFDID AIHQAGYTTE TPVIVTNQND YQPDVVGSLP REIERGEVLL TASKI