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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|24377179, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.67
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNKFKALML GILSVIFMFG AKVSADTVKI VSDSTYAPFE FKDSDQVYKG IDVDIIKKAA  60
   61 EMSGWNYKMT FPGFDAAVNA VQSGQADALM AGTTVTKERE KVFTFSHTYY DTKIVIATRK 120
  121 QDKITKYSQL KGKTVGVKNG TAAQSFLEKH QDKYGYKIKS FDTGDSMYNS LESASVDAVM 180
  181 DDKAVAQYAI NQGQNLRIEM DGESIGSFAF AVKKGSKYEY LIKDFNKALK KMKADGSYDE 240
  241 IMTKWISAKS KTDEQSKTKE TGDAKAKAKP VKSSYKVVMD SSFAPFEFQN DAGQYVGIDV 300
  301 ELIKAIAKQQ GFKIKTENPG FDAALNTVQS SQADAVMAGM SITDDRKKIF DFSDPYYTSN 360
  361 TLLAVRKGSN VVSYKDLKGK KVGAKNGTAS YTFLEKNKAK YGYTLKSFDE ASTMYDSLNS 420
  421 GSIYALMDDE AVLKYAIQQG RKFETPIPGE KSGEYGFAVK KGSSPELIQM FNNGLAALKK 480
  481 SGQYDKIINK YLSDKKKDAK SESSVDESTI FGLLSNNYKQ LLSGLGTTLS LVILSFALAM 540
  541 IVGILFGMMS VSPYKTLRII ASIFVDVVRG IPLMIVAAFI FWGIPNLIES ITGHQSPIND 600
  601 FVAGTIALTL NGGAYIAEIV RGGIEAVPSG QMEASRSLGI SYKTTMKRII LPQAFKLMLP 660
  661 NFINQFVISL KDTTIISAIG LIELFQAGKI IIARNYQSFR MYAILAIMYL VIITLLTRLA 720
  721 KRLEKRIK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle