YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24379108, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKGIETMGE EKIVQKDDNF SGRLNILRAG VLGANDGIIS VAGVVIGVAS ATTNIWFIFL  60
   61 SGLSAILAGA FSMAGGEYVS VSTQKDTEEA AVKREKALLL TDSEKARRSL HNAYLKNGEC 120
  121 ETSAELLTRK AFLKSPVKAM VEEKYGIEYE EFVNPWHAAV SSFFAFTIGS IFPVIAILLF 180
  181 PVTIRIPATV IVVGLALLMT GYVSARLGGA PTRPAMRRNL IVGLLTMLVT YLVGQLFSV

Type	Start	End	Confidence
Cytoplasmic	1	28	0.89
Transmembrane Helix	29	49	0.87
Non-Cytoplasmic	50	54	0.69
Transmembrane Helix	55	75	0.89
Cytoplasmic	76	158	0.94
Transmembrane Helix	159	180	0.89
Non-Cytoplasmic	181	185	0.69
Transmembrane Helix	186	205	0.92
Cytoplasmic	206	218	0.71
Transmembrane Helix	219	237	0.92
Non-Cytoplasmic	238	239	0.80