YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24376316, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKRGAMSP LGNAVGAEEA QKNAAKANIE SLKRQITTEI QKVSDDVTLS LKNLFGLESV  60
   61 GNSFLWQLAS GATATFTEAT LSYEQVRDST YVTFDVNGRD QALLNADSLQ DLDSLAFQQF 120
  121 YPAVAREVNG KLDVLDGSRR RAWFLLQNGK VDIFRILVTK DDISLSDAKA LAKQLQTAKE 180
  181 HNLREIGQQC LSLEKANPKI TQAEVAAQLG MSQAGVSKAL KAAKVDERLV KLFPVASDLS 240
  241 HTDYALLNKV MEVYEFEDEL IEFINDLTQK IVIIQVEYSR AERKSAIIKA MKSELQIAKD 300
  301 MKSKALVSVT NLATFDSSGI YARKRIKGRN FAYEFGRLSL DIQKQLDIAI VDVLKKNKFN 360
  361 TTVD

Type	Start	End	Confidence
Signal Peptide	1	17	0.58
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	364	0.99