YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24351164, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTLSPATNH ATTEAPWIKW SLIGLALSFL ALFLVLPLAV VLYGAFEAGI NVWWQAITDP  60
   61 DALAAIRLTL LVLIIVVPTN AIFGVAIAWA IAKFEFRGKT LLISIIDMPF AISPVVVGLI 120
  121 FVILFGAQGW FGPWLAAHDL KVIFAVPGII IVIMFGTLPF VARELIPLMQ QQGKDEEEAS 180
  181 LTLGANGLKT FWYVTLPNIK WGLLYGVILC NARAMGEFGA VAVVSGRIRG ETNTMPLHIE 240
  241 VLYNEYMFTA AFAVSSLLTG LALVTIVLKS MVEWKDERKH KTN

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	45	0.90
Non-Cytoplasmic	46	65	0.90
Transmembrane Helix	66	91	0.88
Cytoplasmic	92	104	0.85
Transmembrane Helix	105	127	0.86
Non-Cytoplasmic	128	141	0.76
Transmembrane Helix	142	162	0.94
Cytoplasmic	163	200	0.90
Transmembrane Helix	201	224	0.72
Non-Cytoplasmic	225	246	0.90
Transmembrane Helix	247	268	0.93
Cytoplasmic	269	283	0.89