YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24376126, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFPLREAAY LFDSPWNKNM GKAVMKSVLP GFGITLGFSV LYLSLLFLLP VAGLILFTLQ  60
   61 MSWADFWVAI SHPQVVASYK LSFAASFIGA TINAVFGTLV AWVLVRYQFL GKKVVDALVD 120
  121 LPFALPTAVA GIALVTLYST TGWVGQYLYL WGIKVAYSEI GVVIALTYIG LPFVVRTVQP 180
  181 VLADFSKELE EASASLGASR FTTIKRVILP AVLPALLTGY ALAFARAVGE YGSVIFISGN 240
  241 LPYRTEITPL LIVSKAEQYD YNGAAAIGVV MLAAAFILLL IINSLQWWAS KRG

Type	Start	End	Confidence
Cytoplasmic	1	31	0.92
Transmembrane Helix	32	59	0.84
Non-Cytoplasmic	60	82	0.88
Transmembrane Helix	83	105	0.92
Cytoplasmic	106	117	0.86
Transmembrane Helix	118	140	0.86
Non-Cytoplasmic	141	154	0.75
Transmembrane Helix	155	175	0.87
Cytoplasmic	176	206	0.91
Transmembrane Helix	207	228	0.90
Non-Cytoplasmic	229	263	0.94
Transmembrane Helix	264	285	0.91
Cytoplasmic	286	293	0.81