YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24351124, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.18
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQAPKFSLKR SYQVWGVFFL LITLGVNSFI PLCMMCAGMI SMHEVTMHNA GQAAEALLKV  60
   61 AQPTQQPLQQ PILKTDNLTV YPHWLDIPPH IRELSNNEVL TDASKIRYEH AEGPIVNALS 120
  121 VYYTQAGQPL YVWLQFSVTH DLHFAPKNMT AILLLVLITF CASASLAFYM QSKVITPVHQ 180
  181 ISQAIKQHDW EAGGQLSLPQ QQYAELKAIV DALDYSILQL QEAQQRELNF LRFASHELRT 240
  241 PVAICQSSFE ILALQQGELT GATLYASQAT NQMKSLIETL LWLTNKECSS LEKENVALSP 300
  301 LLACIIEEQQ RVHGHEQKIQ LFSDDTCLPI QLHPLKIILS NLLRNSIEHG GRDIRITQDA 360
  361 CCIEITNSYN SKGRHGFGLG LLLVKRLANQ LGWFFTSSSE NNLFTARLEI SNS

Type	Start	End	Confidence
Cytoplasmic	1	13	0.59
Transmembrane Helix	14	41	0.82
Non-Cytoplasmic	42	124	0.61
Transmembrane Helix	125	139	0.18
Cytoplasmic	140	148	0.49
Transmembrane Helix	149	170	0.90
Non-Cytoplasmic	171	413	0.57