YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CYOE_SHEON
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	27	0.97
Transmembrane Helix	28	48	0.95
Non-Cytoplasmic	49	53	0.83
Transmembrane Helix	54	74	0.97
Cytoplasmic	75	94	0.98
Transmembrane Helix	95	116	0.95
Non-Cytoplasmic	117	121	0.81
Transmembrane Helix	122	142	0.92
Cytoplasmic	143	148	0.91
Transmembrane Helix	149	168	0.94
Non-Cytoplasmic	169	174	0.80
Transmembrane Helix	175	196	0.92
Cytoplasmic	197	217	0.92
Transmembrane Helix	218	239	0.87
Non-Cytoplasmic	240	244	0.66
Transmembrane Helix	245	263	0.83
Cytoplasmic	264	279	0.69
Transmembrane Helix	280	299	0.91
Non-Cytoplasmic	300	300	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKPLSISSQ PSVNVAWRDY FEMTKPKVVA LMLLTVLVGM CLAMPTILPV QPLIAGLLGI  60
   61 AMMAGSAAAL NHLIDRRIDG LMARTYNRPL PKGRISATRA LIFAAALGSL GFVILYVFTN 120
  121 PLTAWLTFAS LIGYALIYTA YLKRATPQNI VIGGLAGAMP PLLGWTAVTN QFHGHALLLV 180
  181 IIIFLWTPPH FWALAIHRRA EYAKVDIPML PVTHGVEFTK TCILLYTILL AIACLLPVLV 240
  241 GMSGPLYFVC SSALSCGFIY KAWQLKYQDH EGLAMQVFRF SIYHLMLLFM ALLLDHYLWA 300
  301